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2021

Abraham, Edward H; Guidotti, Guido; Rapaport, Eliezer; Bower, David; Brown, Jack; Griffin, Robert J; Donnelly, Andrew; Waitzkin, Ellen D; Qamar, Kenon; Thompson, Mark A; Ethirajan, Sukumar; Robinson, Kent

Cystic fibrosis improves COVID-19 survival and provides clues for treatment of SARS-CoV-2 Journal Article

Purinergic Signalling, pp. 1–12, 2021, ISSN: 1573-9538.

Abstract | Links | BibTeX | Tags: Publications by specific COV-IRT members

Alpert, Tara; Brito, Anderson F; Lasek-Nesselquist, Erica; Rothman, Jessica; Valesano, Andrew L; MacKay, Matthew J; Petrone, Mary E; Breban, Mallery I; Watkins, Anne E; Vogels, Chantal B F; Kalinich, Chaney C; Dellicour, Simon; Russell, Alexis; Kelly, John P; Shudt, Matthew; Plitnick, Jonathan; Schneider, Erasmus; Fitzsimmons, William J; Khullar, Gaurav; Metti, Jessica; Dudley, Joel T; Nash, Megan; Beaubier, Nike; Wang, Jianhui; Liu, Chen; Hui, Pei; Muyombwe, Anthony; Downing, Randy; Razeq, Jafar; Bart, Stephen M; Grills, Ardath; Morrison, Stephanie M; Murphy, Steven; Neal, Caleb; Laszlo, Eva; Rennert, Hanna; Cushing, Melissa; Westblade, Lars; Velu, Priya; Craney, Arryn; Cong, Lin; Peaper, David R; Landry, Marie L; Cook, Peter W; Fauver, Joseph R; Mason, Christopher E; Lauring, Adam S; George, Kirsten St.; MacCannell, Duncan R; Grubaugh, Nathan D

Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States Journal Article

Cell, 184 (10), pp. 2595–2604.e13, 2021, ISSN: 0092-8674.

Abstract | Links | BibTeX | Tags: Publications by specific COV-IRT members

Okoh, Olayinka Sunday; Nii-Trebi, Nicholas Israel; Jakkari, Abdulrokeeb; Olaniran, Tosin Titus; Senbadejo, Tosin Yetunde; Kafintu-kwashie, Anna Aba; Dairo, Emmanuel Oluwatobi; Ganiyu, Tajudeen Oladunni; Akaninyene, Ifiokakaninyene Ekpo; Ezediuno, Louis Odinakaose; Adeosun, Idowu Jesulayomi; Ockiya, Michael Asebake; Jimah, Esther Moradeyo; Spiro, David J; Oladipo, Elijah Kolawole; Trovão, Nídia S

Epidemiology and genetic diversity of SARS-CoV-2 lineages circulating in Africa Journal Article

medRxiv, pp. 2021.05.17.21257341, 2021.

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Fick, Tyler A; Morris, Shaine A; Tume, Sebastian C; Stafford, Tiffany D; Aagaard, Kjersti; Schady, Deborah; Molossi, Silvana

Fulminant Enteroviral Myocarditis in a Newborn Accompanying Maternal SARS-CoV-2 Infection Journal Article

World Journal for Pediatric and Congenital Heart Surgery, pp. 215013512097577, 2021, ISSN: 2150-1351.

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Thielen, Peter M; Wohl, Shirlee; Mehoke, Thomas; Ramakrishnan, Srividya; Kirsche, Melanie; Falade-Nwulia, Oluwaseun; Trovão, Nídia S; Ernlund, Amanda; Howser, Craig; Sadowski, Norah; Morris, Paul C; Hopkins, Mark; Schwartz, Matthew; Fan, Yunfan; Gniazdowski, Victoria; Lessler, Justin; Sauer, Lauren; Schatz, Michael C; Evans, Jared D; Ray, Stuart C; Timp, Winston; Mostafa, Heba H

Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area Journal Article

JCI Insight, 6 (6), pp. e144350, 2021.

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Vogels, Chantal B F; Breban, Mallery I; Alpert, Tara; Petrone, Mary E; Watkins, Anne E; Ott, Isabel M; de Jesus, Jaqueline Goes; Claro, Ingra Morales; Ferreira, Giulia Magalhães; Crispim, Myuki A E; Network, Brazil-UK CADDE Genomic; Singh, Lavanya; Tegally, Houriiyah; Anyaneji, Ugochukwu J; NGS-SA, ; Hodcroft, Emma B; Mason, Christopher E; Khullar, Gaurav; Metti, Jessica; Dudley, Joel T; MacKay, Matthew J; Nash, Megan; Wang, Jianhui; Liu, Chen; Hui, Pei; Murphy, Steven; Neal, Caleb; Laszlo, Eva; Landry, Marie L; Muyombwe, Anthony; Downing, Randy; Razeq, Jafar; de Oliveira, Tulio; Faria, Nuno R; Sabino, Ester C; Neher, Richard A; Fauver, Joseph R; Grubaugh, Nathan D

PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern Journal Article

medRxiv, pp. 2021.01.28.21250486, 2021.

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Butler, Daniel; Mozsary, Christopher; Meydan, Cem; Foox, Jonathan; Rosiene, Joel; Shaiber, Alon; Danko, David; Afshinnekoo, Ebrahim; MacKay, Matthew; Sedlazeck, Fritz J; Ivanov, Nikolay A; Sierra, Maria; Pohle, Diana; Zietz, Michael; Gisladottir, Undina; Ramlall, Vijendra; Sholle, Evan T; Schenck, Edward J; Westover, Craig D; Hassan, Ciaran; Ryon, Krista; Young, Benjamin; Bhattacharya, Chandrima; Ng, Dianna L; Granados, Andrea C; Santos, Yale A; Servellita, Venice; Federman, Scot; Ruggiero, Phyllis; Fungtammasan, Arkarachai; Chin, Chen-Shan; Pearson, Nathaniel M; Langhorst, Bradley W; Tanner, Nathan A; Kim, Youngmi; Reeves, Jason W; Hether, Tyler D; Warren, Sarah E; Bailey, Michael; Gawrys, Justyna; Meleshko, Dmitry; Xu, Dong; Couto-Rodriguez, Mara; Nagy-Szakal, Dorottya; Barrows, Joseph; Wells, Heather; O’Hara, Niamh B; Rosenfeld, Jeffrey A; Chen, Ying; Steel, Peter A D; Shemesh, Amos J; Xiang, Jenny; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Iftner, Angelika; Bezdan, Daniela; Sanchez, Elizabeth; Campion, Thomas R; Sipley, John; Cong, Lin; Craney, Arryn; Velu, Priya; Melnick, Ari M; Shapira, Sagi; Hajirasouliha, Iman; Borczuk, Alain; Iftner, Thomas; Salvatore, Mirella; Loda, Massimo; Westblade, Lars F; Cushing, Melissa; Wu, Shixiu; Levy, Shawn; Chiu, Charles; Schwartz, Robert E; Tatonetti, Nicholas; Rennert, Hanna; Imielinski, Marcin; Mason, Christopher E

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions Journal Article

Nature Communications, 12 (1), pp. 1660, 2021.

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Rendeiro, André F; Ravichandran, Hiranmayi; Bram, Yaron; Chandar, Vasuretha; Kim, Junbum; Meydan, Cem; Park, Jiwoon; Foox, Jonathan; Hether, Tyler; Warren, Sarah; Kim, Youngmi; Reeves, Jason; Salvatore, Steven; Mason, Christopher E; Swanson, Eric C; Borczuk, Alain C; Elemento, Olivier; Schwartz, Robert E

The spatial landscape of lung pathology during COVID-19 progression Journal Article

Nature, 593 (7860), pp. 564–569, 2021, ISSN: 0028-0836.

Abstract | Links | BibTeX | Tags: Publications by specific COV-IRT members

2020

I, Solaimanzadeh

Acetazolamide, Nifedipine and Phosphodiesterase Inhibitors: Rationale for Their Utilization as Adjunctive Countermeasures in the Treatment of Coronavirus Disease 2019 (COVID-19) Journal Article

Cureus, 12 (3), pp. e7343, 2020, ISSN: 2168-8184.

Abstract | Links | BibTeX | Tags: Publications by specific COV-IRT members

Singh, Keshav K; Chaubey, Gyaneshwer; Chen, Jake Y; Suravajhala, Prashanth

Decoding SARS-CoV-2 hijacking of host mitochondria in COVID-19 pathogenesis Journal Article

American Journal of Physiology-Cell Physiology, 319 (2), pp. C258–C267, 2020, ISSN: 0363-6143.

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Codo, Ana Campos; Davanzo, Gustavo Gastão; de Monteiro, Lauar Brito; de Souza, Gabriela Fabiano; Muraro, Stéfanie Primon; Virgilio-da-Silva, João Victor; Prodonoff, Juliana Silveira; Carregari, Victor Corasolla; de Junior, Carlos Alberto Oliveira Biagi; Crunfli, Fernanda; Restrepo, Jeffersson Leandro Jimenez; Vendramini, Pedro Henrique; Reis-de-Oliveira, Guilherme; dos Santos, Karina Bispo; Toledo-Teixeira, Daniel A; Parise, Pierina Lorencini; Martini, Matheus Cavalheiro; Marques, Rafael Elias; Carmo, Helison R; Borin, Alexandre; Coimbra, Laís Durço; Boldrini, Vinícius O; Brunetti, Natalia S; Vieira, Andre S; Mansour, Eli; Ulaf, Raisa G; Bernardes, Ana F; Nunes, Thyago A; Ribeiro, Luciana C; Palma, Andre C; Agrela, Marcus V; Moretti, Maria Luiza; Sposito, Andrei C; Pereira, Fabrício Bíscaro; Velloso, Licio Augusto; Vinolo, Marco Aurélio Ramirez; Damasio, André; Proença-Módena, José Luiz; Carvalho, Robson Francisco; Mori, Marcelo A; Martins-de-Souza, Daniel; Nakaya, Helder I; Farias, Alessandro S; Moraes-Vieira, Pedro M

Elevated Glucose Levels Favor SARS-CoV-2 Infection and Monocyte Response through a HIF-1α/Glycolysis-Dependent Axis Journal Article

Cell Metabolism, 32 (3), pp. 498–499, 2020, ISSN: 1550-4131.

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I, Solaimanzadeh

Heterogeneous Perfusion in COVID-19 and High Altitude Pulmonary Edema: A Review of Two Cases Followed by Implications for Hypoxic Pulmonary Vasoconstriction, Thrombosis Development, Ventilation Perfusion Mismatch and Emergence of Treatment Approaches Journal Article

Cureus, 12 (9), pp. e10230, 2020, ISSN: 2168-8184.

Abstract | Links | BibTeX | Tags: Publications by specific COV-IRT members

Hantoushzadeh, Sedigheh; Shamshirsaz, Alireza A; Aleyasin, Ashraf; Seferovic, Maxim D; Aski, Soudabeh Kazemi; Arian, Sara E; Pooransari, Parichehr; Ghotbizadeh, Fahimeh; Aalipour, Soroush; Soleimani, Zahra; Naemi, Mahsa; Molaei, Behnaz; Ahangari, Roghaye; Salehi, Mohammadreza; Oskoei, Atousa Dabiri; Pirozan, Parisa; Darkhaneh, Roya Faraji; Laki, Mahboobeh Gharib; Farani, Ali Karimi; Atrak, Shahla; Miri, Mir Mohammad; Kouchek, Mehran; Shojaei, Seyedpouzhia; Hadavand, Fahimeh; Keikha, Fatemeh; Hosseini, Maryam Sadat; Borna, Sedigheh; Ariana, Shideh; Shariat, Mamak; Fatemi, Alireza; Nouri, Behnaz; Nekooghadam, Seyed Mojtaba; Aagaard, Kjersti

Maternal death due to COVID-19 Journal Article

American Journal of Obstetrics and Gynecology, 223 (1), pp. 109.e1–109.e16, 2020, ISSN: 0002-9378.

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Saleh, Jumana; Peyssonnaux, Carole; Singh, Keshav K; Edeas, Marvin

Mitochondria and microbiota dysfunction in COVID-19 pathogenesis Journal Article

Mitochondrion, 54 , pp. 1–7, 2020, ISSN: 1567-7249.

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Solaimanzadeh, Isaac; I, Solaimanzadeh

Nifedipine and Amlodipine Are Associated With Improved Mortality and Decreased Risk for Intubation and Mechanical Ventilation in Elderly Patients Hospitalized for COVID-19 Journal Article

Cureus Journal of Medical Science, 12 (5), pp. e8069, 2020, ISSN: 2168-8184.

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Sulentic, Rose O; Seferovic, Maxim D; Aagaard, Kjersti M; Valentine, Gregory C

Perinatal COVID-19 outcomes: evaluating the strength of current evidence Journal Article

The Journal of Maternal-Fetal & Neonatal Medicine, pp. 1–7, 2020, ISSN: 1476-7058.

Abstract | Links | BibTeX | Tags: Publications by specific COV-IRT members

Mavian, Carla; Pond, Sergei Kosakovsky; Marini, Simone; Magalis, Brittany Rife; Vandamme, Anne-Mieke; Dellicour, Simon; Scarpino, Samuel V; Houldcroft, Charlotte; Villabona-Arenas, Julian; Paisie, Taylor K; Trovão, Nídia S; Boucher, Christina; Zhang, Yun; Scheuermann, Richard H; Gascuel, Olivier; Lam, Tommy Tsan-Yuk; Suchard, Marc A; Abecasis, Ana; Wilkinson, Eduan; de Oliveira, Tulio; Bento, Ana I; Schmidt, Heiko A; Martin, Darren; Hadfield, James; Faria, Nuno; Grubaugh, Nathan D; Neher, Richard A; Baele, Guy; Lemey, Philippe; Stadler, Tanja; Albert, Jan; Crandall, Keith A; Leitner, Thomas; Stamatakis, Alexandros; Prosperi, Mattia; Salemi, Marco

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable Journal Article

Proceedings of the National Academy of Sciences, 117 (23), pp. 12522–12523, 2020, ISSN: 0027-8424.

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Hansen, Johanna; Baum, Alina; Pascal, Kristen E; Russo, Vincenzo; Giordano, Stephanie; Wloga, Elzbieta; Fulton, Benjamin O; Yan, Ying; Koon, Katrina; Patel, Krunal; Chung, Kyung Min; Hermann, Aynur; Ullman, Erica; Cruz, Jonathan; Rafique, Ashique; Huang, Tammy; Fairhurst, Jeanette; Libertiny, Christen; Malbec, Marine; Lee, Wen-yi; Welsh, Richard; Farr, Glen; Pennington, Seth; Deshpande, Dipali; Cheng, Jemmie; Watty, Anke; Bouffard, Pascal; Babb, Robert; Levenkova, Natasha; Chen, Calvin; Zhang, Bojie; Hernandez, Annabel Romero; Saotome, Kei; Zhou, Yi; Franklin, Matthew; Sivapalasingam, Sumathi; Lye, David Chien; Weston, Stuart; Logue, James; Haupt, Robert; Frieman, Matthew; Chen, Gang; Olson, William; Murphy, Andrew J; Stahl, Neil; Yancopoulos, George D; Kyratsous, Christos A

Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail Journal Article

Science, 369 (6506), pp. 1010–1014, 2020, ISSN: 0036-8075.

Abstract | Links | BibTeX | Tags: Publications by specific COV-IRT members